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Isoform view on Gene Views
Ingenuity Pathway Analysis (IPA) | Currently Available Canonical Pathways
The versions of the identifier and gene model databases used in IPA currently
Summary of Release Notes
More info link for URA master table
Ingenuity Pathway Analysis (IPA)
Ingenuity Pathway Analysis (IPA)
Ingenuity Pathway Analysis (IPA)
Ingenuity Pathway Analysis (IPA)
A dataset file may contain more than one of the identifier type. If your dataset file has more than one identifier type, select all appropriate identifier types found in the dataset file from the dropdown menu.
Ingenuity Pathway Analysis (IPA)
FAQs about the microRNA Target Filter
Ingenuity Pathway Analysis (IPA)
Ingenuity Pathway Analysis (IPA) | Data Upload workflow
Ingenuity Pathway Analysis (IPA)
Ingenuity Pathway Analysis (IPA)
Ingenuity Pathway Analysis (IPA)
FAQs on HumanCyc Database
Ingenuity Pathway Analysis (IPA) | Experimental Metadata Specifications
Ingenuity Pathway Analysis (IPA) | How to upload multiple datasets as a batch
Ingenuity Pathway Analysis (IPA)
Ingenuity Pathway Analysis (IPA) | Definitions for the Data Upload workflow
IPA Technical Requirements
Description of the molecule tab in Core Analysis
Listing of Networks
Core Analysis tab that displays related analyses (among thousands of curated analyses) based on shared pattern of predicted "entities" like Upstream Regulators, Canonical Pathways, etc.
How can I see the pathways related to this analysis?
Ingenuity Pathway Analysis (IPA)
How to Format and Upload custom findings data file in IPA
Canonical Pathways for a Dataset
Pathway Activity Overlay (part of Pathway Activity Analysis performed within a core analysis)
This article is about running IPA on a Mac. FAQ, Caches and Version of Mac OS and Java
Reference Set Array platforms in IPA
Describes the tool bar icons, colors, and more in IPA
Regulator Effects
Describes the Advanced Settings available to customize a Core Analysis
Describes how to add a legend to a Path Designer pathway
How are networks calculated?
How can I find research papers on a given topic?
An Overview of the Canonical Pathways in IPA
Description of the Cell Art tool of Path Designer
Canonical Pathways that are currently eligible for Pathway Activity Analysis
An overview of Overlapping Networks
Networks View
Analysis Summary Page
Comparison analysis heat map for canonical pathways
Description of the filters used in Build tools
Description of the existing metadata keys you can use in IPA to annotate your own datasets
Overlay tool to identify nodes or relationships in networks and pathways and then act upon them
Obsolete, please see Highlight or Select
Description of how to set up a Core Analysis
Description of the filters available to pre-filter a Core Analysis
How can I share data with others?
IsoProfiler displays and enables filtering on transcripts & isoforms in your RNA-seq dataset(s)
Uploading Cuffdiff RNA-Seq files as datasets in IPA
How to use the IPA client installer
Running IPA on Windows
Running IPA on Windows
Workflow describing how to use the MicroRNA-Target Filter
Path Explorer
Whitepaper Link
Mechanistic Networks
Export All
Examine the detailed relationships between isoforms (splice variants) and known diseases and functions.
Advanced Analytics BioProfiler
Description of the types of Core Analysis types you can run in IPA
Importing and using variant loss/gain and ACMG classification datasets
High Resolution Images of IPA Legend
How to run multiple analysis as a batch
My Findings
Search Project Manager for Analysis and Dataset
Comparison Analysis heat map for Disease and Functions
Advanced Analytics - Generate virtual upstream regulators which are networks of regulators
Add My Findings from the Build Tool
Comparison analysis heat map for upstream analysis
Grow to Diseases and Functions
Preview of basic information about a molecule
Choose different ways to arrange nodes on a network or a my pathway
PathTracer
PathTracer
Relationship Export
Password Reset
Gene view Disease or Function view Chem view
What can I do with the search results?
What’s the difference between the search tabs?
How do I search for pathways associated with a gene?
Compare data tool
How to Overlay Analyses, Datasets, and Lists
What other tools does IPA work with?
Can I do an analysis with a list of genes only?
Overview of MY Pathways
How many genes are up or down regulated in a pathway?
FAQs on the miRNA targeting relationships in IPA
What kind of data should I have?
How do I add my own custom genes and connections?
What species identifiers are accepted for analysis by IPA?
More info link for Downstream Effect Analysis Evidence for Effect
Can I suggest articles and findings to add?
My file won’t open/upload correctly. What should I do?
A comprehensive set of feature descriptions is available in the sub categories under Uploading and Analyzing Data. Select the topic you are interested in and the list of available articles will appear in this space.
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